Sami Brandt's Publications
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Scientific Journal Articles and Book Chapters
Kersten Petersen, Melanie Ganz., Peter Mysling, Mads Nielsen, Lene Lillemark, Alessandro Crimi, and Sami S. Brandt (2012). A Bayesian Framework for Automated Cardiovascular Risk Scoring on Standard Lumbar Radiographs. IEEE Transactions on Medical Imaging 31(3):663-676. [link]
Sami S. Brandt, Gopal Karemore, Nico Karssemeijer, and Mads Nielsen (2011). An Anatomically Oriented Breast Coordinate System for Mammogram Analysis. IEEE Transactions on Medical Imaging. 30(10):1841-1851. [link]
Juho Kannala, Markus Ylimaki, Pekka Koskenkorva, and Sami S. Brandt (2011). Multi-View Surface Reconstruction by Quasi-Dense Wide Baseline Matching. In Emerging Topics in Computer Vision and Its Applications. Invited Book chapter. [pdf]
Danai Laksameethanasan and Sami S. Brandt (2010). A Bayesian Reconstruction Method with Marginalized Uncertainty Model for Camera Motion in Micro-Rotation Imaging. IEEE Transactions on Biomedical Imaging 57(7):1719-1728, July. [link]
Danai Laksameethanasan, Sami S. Brandt, Olivier Renaud, and Spencer L. Shorte (2009). Dual Filtered Backprojection for Micro-Rotation Confocal Microscopy. Inverse Problems 25(1). [pdf]
Juho Kannala, Sami S. Brandt, and Janne Heikkilä (2008). Self-Calibration of Central Cameras from Point Correspondences by Minimizing Angular Error, Invited book chapter. Communications in Computer and Information Science 24: 109-122, Springer. [link]
Juho Kannala, Janne Heikkilä, and Sami.S. Brandt (2008). Geometric Camera Calibration. In Wiley Encyclopedia of Computer Science and Engineering. Invited book chapter. [pdf](preprint) [link]
Juho Kannala, Sami S. Brandt, and Janne Heikkilä (2008). Measuring and Modelling Sewer Pipes from Video. Machine Vision and Applications, 19(2):73-83, March. [pdf]
Sami S. Brandt (2008). On the Probabilistic Epipolar Geometry. Image and Vision Computing 26(3):405-414, March. [link]
Danai Laksameethanasan, Sami S. Brandt, Peter Engelhardt, Olivier Renaud, and Spencer Shorte (2008). A Bayesian Reconstruction Method for Micro-Rotation Imaging in Light Microscopy. Microscopy Research and Technique, 71(2):158-167, February. [link]
Sami S. Brandt and Ville Kolehmainen (2007). Structure-From-Motion Without Correspondence from Tomographic Projections by Bayesian Inversion Theory. IEEE Transcations on Medical Imaging, 26(2):238-248, February. [link]
Sami S. Brandt (2006). Markerless Alignment in Electron Tomography. In Electron Tomography (J. Frank ed.), second edition. Springer. Invited book chapter. [link]
Sami S. Brandt (2006). Maximum Likelihood Robust Regression by Mixture Models. Journal of Mathematical Imaging and Vision, 25:25-48. [link]
Juho Kannala and Sami S. Brandt (2006). A Generic Camera Model and Calibration Method for Conventional, Wide-Angle, and Fish-Eye Lenses. IEEE Transactions on Pattern Analysis and Machine Intelligence, 22(8):1335-1340, August. [pdf]
Sami S. Brandt and Ulrike Ziese (2006). Automatic TEM Image Alignment by Trifocal Geometry. Journal of Microscopy. 222(1):1-14, April. [link]
Sami S. Brandt (2005). Conditional Solutions for the Affine Reconstruction of N-Views. Image and Vision Computing, 23(7):619-630, July. [link]
Sami Brandt, Jorma Laaksonen, and Erkki Oja (2002). Statistical Shape Features for Content-Based Image Retrieval. Journal of Mathematical Imaging and Vision, 17:183-194. [link]
Sami Brandt, Jukka Heikkonen, and Peter Engelhardt (2001). Automatic Alignment of Transmission Electron Microscope Tilt-Series without Fiducial Markers. Journal of Structural Biology, 136 pp. 201-213. [link]
Sami Brandt, Jukka Heikkonen, and Peter Engelhardt (2001). Multiphase Method for Automatic Alignment of Transmission Electron Microscope Images Using Markers. Journal of Structural Biology, 133(1) pp. 10-22. [link]
Sami Brandt and Jukka Heikkonen (2000). A Bayesian Weighting Principle for the Fundamental Matrix Estimation. Pattern Recognition Letters, 21(12) pp. 1081-1092, November. [link]
Conference Articles
Sami S. Brandt, Katrine Hommelhoff Jensen, and Francois Lauze (2012). Bayesian Epipolar Geometry Estimation from Tomographic Projections. Accepted for publication in the 11th Asian Conference on Computer Vision (ACCV 2012), Daejeon, South Korea.
Markus Ylimaki, Juho Kannala, Jukka Holappa, Janne Heikkila, Sami S. Brandt (2012). Robust and Accurate Multi-View Reconstruction by Prioritized Matching. Accepted for publication in International Conference on Pattern Recognition (ICPR 2012), Tsukuba, Japan.
Lene Lillemark and Sami S. Brandt (2011). Prediction of Growth Based on Shape Analysis of Atherosclerotic Calcifications From Lateral X-Ray Images. In Proc. IEEE International Symposium on Biomedical Imaging (ISBI 2011), Chicago, IL, USA. [pdf]
Mattias Hansson, Ketut Fundana, Sami Brandt, and Petri Gudmunsson (2011). Convex Spatio-Temporal Segmentation of the Endocardium in Ultrasound Data Using Distribution and Shape Priors. In Proc. IEEE International Symposium on Biomedical Imaging (ISBI 2011), Chicago, IL, USA. [pdf]
Kersten Petersen, Mads Nielsen, and Sami S. Brandt (2010). Conditional Point Distribution Models. In Proc. Medical Computer Vision 2010, in conjuction with MICCAI 2010, Beijing, China; LNCS 6533/2011, pp. 1-10. [pdf]
Melanie Ganz, Mads Nielsen, and Sami S. Brandt (2010). Patch-based Generative Shape Model and MDL Model Selection for Statistical Analysis of Archipelagos. In Proc. Machine Learning in Medical Imaging 2010, in conjuction with MICCAI 2010, Beijing, China; LNCS 6357/2010, pp. 34-41. [pdf]
Gopal R. Karemore, Sami Brandt, Jon Sporring, and Mads Nielsen (2010). Anisotropic Diffusion Tensor Applied to Temporal Mammograms: An Application to Breast Cancer Risk Assessment. In Proc. 32nd Annual Internaional Conference of the IEEE Engineering in Medicine and Biology Society, Buenos Aires, Argentina. [pdf]
Kersten Petersen, Mads Nielsen, and Sami S. Brandt (2010). An SMC Sampler on Shapes for the Automated Segmentation of Aortic Calcifications. In Proc. European Conference on Computer Vision (ECCV 2010), Crete, Greece. [pdf]
Pekka Koskenkorva, Juho Kannala, and Sami S. Brandt (2010). Quasi-Dense Wide Baseline Matching for Three Views. In Proc. 20th International Conference on Pattern Recognition (ICPR 2010), Istanbul, Turkey. [pdf]
Mattias Hansson, Sami Brandt, Petri Gudmundsson, and Finn Lindgren (2009). Evaluation Of Cardiac Ultrasound Data by Bayesian Probability Maps. In Proc. 5th International Symposium on Visual Computing (ISVC 2009), Las Vegas, NV. [pdf]
Sami S. Brandt, Pekka Koskenkorva, Juho Kannala, and Anders Heyden (2009). Uncalibrated Non-rigid Factorisation with Automatic Shape Basis Selection. In Proc. Second Workshop on Non-Rigid Shape Analysis and Deformable Image Alignment (NORDIA'09); in conjunction with ICCV. [pdf]
Mattias Hansson, Sami Brandt, and Petri Gudmundsson (2009). Bayesian Probability Maps For Evaluation Of Cardiac Ultrasound Data. In Proc. Probabilistic Models for Medical Image Analysis (PMMIA 2009); in conjunction with MICCAI, London, UK. [pdf]
Sami S. Brandt (2009). Dual Distributions of Multilinear Geometric Entities. In Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR 2009), Miami, FL, USA, June. [pdf]
Melanie Ganz, Marco Loog, Sami Brandt, and Mads Nielsen (2009). Iterative Contextual Pixel Classification using Kriging. In Prococeedings of the IEEE Computer Society Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA); in conjunction with CVPR, Miami, FL, USA, June. [pdf][poster]
Juho Kannala, Esa Rahtu, Sami S. Brandt, and Janne Heikkilä (2009). Dense and Deformable Motion Segmentation for Wide Baseline Images, in Proceedings of the 16th Scandinavian Conference on Image Analysis, Oslo, Norway, June. [pdf]
Sami S. Brandt (2008). Consistent and Efficient Sampler for Geometric Computation. In Proceedings if the 19th International Conference on Pattern Recognition (ICPR 2008), Tampa, FL, USA, December. [pdf]
Kimmo Palander and Sami S. Brandt (2008). Epipolar Geometry and Log-Polar Transform in Wide Baseline Stereo Matching. In Proceedings if the 19th International Conference on Pattern Recognition (ICPR 2008), Tampa, FL, USA, December. [pdf]
Juho Kannala, Esa Rahtu, Sami S. Brandt, and Janne Heikkilä (2008). Object Recognition and Segmentation by Non-Rigid Quasi-Dense Matching. In Proc. IEEE Conference on Computer Vision and Pattern Recognition (CVPR 2008), Anchorage, AK, USA, June. [pdf]
Juho Kannala, Sami S. Brandt, and Janne Heikkilä (2008). Self-Calibration of Central Cameras by Minimizing Angular Error. In Proc. 3rd International Conference on Computer Vision Theory and Applications (VISAPP 2008), Madeira, Portugal, January. [pdf]
Danai Laksameethanasan and Sami S. Brandt (2007). Generalised Skilling-Bryan Minimisation for Micro-Rotation Imaging in Light Microscopy. In Proc. 27th International Workshop on Bayesian Inference and Maximum Entropy Methods in Science and Engineering (MaxEnt 2007). [pdf]
Juho Kannala and Sami S. Brandt (2007). Quasi-dense wide baseline matching using match propagation. In Proc. IEEE Conference on Computer Vision and Pattern Recognition (CVPR 2007), pp.1-8, Minneapolis, MN, USA, June. [pdf]
Sami S. Brandt and Ulrike Ziese (2006). Robust Alignment of Transmission Electron Microscope Tilt Series. In Proceedings of the 18th International Conference on Pattern Recognition (ICPR 2006), Vol 4. pp. 683-686, Hong Kong, China, August. [pdf]
Sami S. Brandt (2006). Robust Factorisation with Uncertainty Analysis. In Proceedings of the 18th International Conference on Pattern Recognition (ICPR 2006), Vol 1. pp. 39-42, Hong Kong, China, August. [pdf]
Sami S. Brandt and Markos Mevorah (2006). Camera Motion Recovery without Correpondence from Micro-Rotation Sets in Wide-Field Light Microscopy. Proc. Statistical Methods in Multi-Image and Video Processing Workshop, in conjunction with ECCV 2006, Graz, Austria, May. [pdf]
Danai Laksameethanasan, Sami S. Brandt, and Peter Engelhardt (2006). A Three-Dimensional Bayesian Reconstruction Method with the Point Spread Function for Micro-Rotation Sequences in Wide-Field Microscopy. In Proc. IEEE International Symposium on Biomedical Imaging (ISBI 2006), April. [pdf]
Sami S. Brandt and Kimmo Palander (2005). A Bayesian Approach for Affine Auto-Calibration. In Proceedings of the Scandinavian Conference on Image Analysis (SCIA 2005), pp. 577-587, Joensuu, Finland, June. [pdf]
Juho Kannala and Sami S. Brandt (2005). Measuring the shape of sewer pipes from video. In Proceedings of the Ninth IAPR Conference on Machine Vision Applications (MVA 2005), pp. 237-240, Tsukuba, Japan, May. [pdf]
Sami S. Brandt (2004). On the Probabilistic Epipolar Geometry. In Proceedings of the British Machine Vision Conference (BMVC 2004), Vol 1., pp. 107-116, London, U.K, September. [pdf]
Juho Kannala and Sami Brandt (2004). A Generic Camera Calibration Method for Fish Eye Lenses. In Proceedings of the 17th International Conference on Pattern Recognition (ICPR 2004), Vol 1, pp. 10-13, Cambridge, U.K, August. [pdf]
Sami S. Brandt and Ville Kolehmainen (2004). Motion Without Correspondence from Tomographic Projections by Bayesian Inversion Theory. In Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recogntion (CVPR 2004), Vol I, pp. 582-587, Washington DC, June. [pdf]
Sami Brandt, Jukka Heikkonen, and Peter Engelhardt (2002). On the Alignment of Transmission Electron Microscope Images without Fiducial Markers. In Proceedings of the 16th International Conference on Pattern Recognition (ICPR 2002), pp. 278-281, Quebec City, Canada, August. [ps]
Sami Brandt (2002). Closed-Form Solutions for Affine Reconstruction under Missing Data. In Proceedings of the Statistical Methods for Video Processing Workshop, in conjunction with ECCV 2002, pp. 109-114, Copenhagen, Denmark, June. [ps]
Sami Brandt (2002). Maximum Likelihood Robust Regression with Known and Unknown Residual Models. In Proceedings of the Statistical Methods for Video Processing Workshop, in conjunction with ECCV 2002, pp. 97-102, Copenhagen, Denmark, June. [ps]
Sami Brandt and Jukka Heikkonen (2001). Multi-Resolution Matching of Uncalibrated Images Utilizing Epipolar Geometry and Its Uncertainty. In Proceedings of the IEEE International Conference on Image Processing (ICIP 2001), Vol. 2, pp. 213-216, Thessaloniki, Greece, October. [ps]
Sami Brandt and Jukka Heikkonen (2001). Optimal Method for the Affine F-matrix and Its Uncertainty Estimation in the Sense of both Noise and Outliers. In Proceedings of the Eighth International Conference on Computer Vision (ICCV 2001), Vol. 2, pp. 166-173, Vancouver, Canada, July. [ps]
Sami Brandt, Jukka Heikkonen, and Peter Engelhardt (2001). Automatic Alignment of Transmission Electron Microscope Images Using Markers. In Proceedings of the 12th Scandinavian Conference on Image Analysis (SCIA 2001), pp. 33-40, Bergen, Norway, June. [ps]
Jorma Laaksonen, Erkki Oja, Markus Koskela, and Sami Brandt (2000). Analyzing Low-Level Visual Features Using Content-Based Image Retrieval. In Proceedings of International Conference on Neural Information Processing (ICONIP-2000), Taejon, Korea, November. [ps]
Sami Brandt and Jukka Heikkonen (2000). A Fully Automatic Alignment of Electron Tomography Images Without Fiducial Markers. In Proceedings of the IAPR Workshop on Machine Vision Applications 2000, pp. 307-310, Tokyo, Japan, November. [ps]
Sami Brandt and Jukka Heikkonen (2000). A New Robust Bayesian Method for the Affine Fundamental Matrix Estimation. In Vision, Modeling, and Visualization 2000, pp. 39-46, Saarbrücken, Germany, November. [ps]
Sami Brandt and Jukka Heikkonen (2000). An Automatic Alignment of Electron Tomography Images Using Markers. In Intelligent Robots and Computer Vision XIX: Algorithms, Techniques, and Active Vision, D. P. Casasent, editor, Proceedings of SPIE, Vol. 4197, pp. 277-287, Boston, MA, September. [ps]
Sami Brandt, Jorma Laaksonen, and Erkki Oja (2000). Statistical Shape Features in Content-Based Image Retrieval. In Proceedings of the 15th International Conference on Pattern Recognition (ICPR 2000), Vol. 2, pp. 1066-1069, Barcelona, Spain, September. [ps]
Erkki Oja, Jorma Laaksonen, Markus Koskela, and Sami Brandt (1999). Self-Organizing Maps for Content-Based Image Database Retrieval. Published in WSOM'99 in Kohonen Maps (E. Oja and S. Kaski, eds.). Espoo, Finland. July. [pdf]
Jouni Juujärvi, Jukka Heikkonen, Sami Brandt, and Jouko Lampinen (1998). Digital Image Based Tree Measurement for Forest Inventory. In Intelligent Robots and Computer Vision XVII: Algorithms, Techniques, and Active Vision, D. P. Casasent, editor, Proc. SPIE 3522, pp. 114-123. [pdf]
Scientific Monographs
Sami Brandt (2002). Theorems and Algorithms for Multiple View Geometry with Applications to Electron Tomography, Doctoral thesis for the degree of Doctor of Science in Technology, Helsinki University of Technology, October. [ps]
Sami Brandt (1999). Use of Shape Features in Content-Based Image Retrieval, Master's thesis, Helsinki University of Technology, September. [ps]
Conference Abstracts
Gopal R. Karemore, Sami Brandt, and Mads Nielsen (2010). An Automatic Framework for Assessing Breast Cancer Risk Due to Various Hormone Replacement Therapies (HRT) : A novel CAD Application in Digital Mammography. In. Proc. 96th Scientific Assembly and Annual Meeting 96th Scientific Assembly and Annual Meeting RSNA 2010, Chigago, Illinois. To appear.
Sami Brandt, Jukka Heikkonen, and Peter Engelhardt (2002). Automatic Alignment of TEM Tilt-Series with and without Fiducial Markers. Proceedings of the 53rd annual Meeting of The Scandinavian Society for Electron Microscopy (SCANDEM 2002), pp. 66-67, June. (Abstract) [pdf]
Other Scientific Publications
Sami Brandt and Jukka Heikkonen (1999). A New Robust Bayesian Method for the F-Matrix Estimation. Helsinki University of Technology, Laboratory of Computational Engineering, Research reports, series B 20.
Sami Brandt (1998). Sinimalleihin perustuva äänenkäsittely. Välimäki, Karjalainen (toim.), Signaalinkäsittely audiotekniikassa, akustiikassa ja musiikissa, Äänenkäsittelyn seminaari, Teknillinen korkeakoulu, Akustiikan ja Äänenkäsittelytekniikan laboratorio, Raportti 50, s. 55-64.