Imageserver1-3

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==2011-09-23 sommer:==
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New setup for portage. emerge now uses tunnels on ask.diku.dk. Testing on imageserver2. Before using emerge run on ask
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  ssh -N -R 11112:rsync1.fi.gentoo.org:87 imageserver2
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  ssh -N -R 11111:ftp.klid.dk:80 imageserver2
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assuming imageserver2 points to imageserver2 (otherwise use ip). /etc/make.conf on imageserver2 is setup up to use these tunnel.
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 +
Running
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  emerge --sync
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  emerge portage (and updated three conf files)
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  emerge glibc (trying to solve freesurfer popen problem)
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and
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sommer@imageserver2 ~ $ gcc-config -l
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[1] x86_64-pc-linux-gnu-4.1.2 *
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[2] x86_64-pc-linux-gnu-4.3.4
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sommer@imageserver2 ~ $ gcc-config 2
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==2009-11-10 kimstp:==
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Emerged GNU Scientific Library (gsl):
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  emerge gsl
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==2009-11-10 kimstp:==
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Reinstalled Opencv by hand in /opt/opencv
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 +
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==2009-11-06 :==
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* updated gentoo to latest version including...
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** shifting profile
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** added '-apache' to USE flags in /etc/make.conf to prevent installation of apache
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** added 'dev-libs/apr-util -mysql' to /etc/portage/package.use to prevent installation of mysql
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(the last point was not done on imageserver1 before upgrading. Mysql is therefore installed on this server)
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==2009-10-26 runef:==
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* Installed sysstat for monitoring resources
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<pre>
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emerge sysstat  (required no extra dependencies)
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rc-update -a sysstat defaults
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</pre>
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Sysstat tutorial: http://pagesperso-orange.fr/sebastien.godard/tutorial.html
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==2009-08-25 sporring:==
==2009-08-25 sporring:==
glcu failed, updated by hand, no problems except many files missing from diku mirror.  Python upgraded to 2.6, keep an eye out for possible problems.
glcu failed, updated by hand, no problems except many files missing from diku mirror.  Python upgraded to 2.6, keep an eye out for possible problems.

Latest revision as of 15:23, 23 September 2011

Contents

2011-09-23 sommer:

New setup for portage. emerge now uses tunnels on ask.diku.dk. Testing on imageserver2. Before using emerge run on ask

 ssh -N -R 11112:rsync1.fi.gentoo.org:87 imageserver2
 ssh -N -R 11111:ftp.klid.dk:80 imageserver2

assuming imageserver2 points to imageserver2 (otherwise use ip). /etc/make.conf on imageserver2 is setup up to use these tunnel.

Running

 emerge --sync
 emerge portage (and updated three conf files)
 emerge glibc (trying to solve freesurfer popen problem)

and

sommer@imageserver2 ~ $ gcc-config -l

[1] x86_64-pc-linux-gnu-4.1.2 *
[2] x86_64-pc-linux-gnu-4.3.4

sommer@imageserver2 ~ $ gcc-config 2


2009-11-10 kimstp:

Emerged GNU Scientific Library (gsl):

 emerge gsl

2009-11-10 kimstp:

Reinstalled Opencv by hand in /opt/opencv


2009-11-06 :

  • updated gentoo to latest version including...
    • shifting profile
    • added '-apache' to USE flags in /etc/make.conf to prevent installation of apache
    • added 'dev-libs/apr-util -mysql' to /etc/portage/package.use to prevent installation of mysql

(the last point was not done on imageserver1 before upgrading. Mysql is therefore installed on this server)

2009-10-26 runef:

  • Installed sysstat for monitoring resources
emerge sysstat  (required no extra dependencies)
rc-update -a sysstat defaults

Sysstat tutorial: http://pagesperso-orange.fr/sebastien.godard/tutorial.html

2009-08-25 sporring:

glcu failed, updated by hand, no problems except many files missing from diku mirror. Python upgraded to 2.6, keep an eye out for possible problems.


2009-06-19 kimstp:

Installed boost on all imageserver machines by doing:

 emerge boost

Apparently no problems.

2009-06-19 kimstp:

Installed blas-atlas, lapack-atlas, GLEW, and DEVIL on all machines by doing:

 emerge blas-atlas lapack-atlas glew devil

Apparently no problems.

2009-06-17 kimstp:

Installed OpenCV version 1.1pre1 by hand on all machines in

 /opt/opencv/

Apparently no problems.

2009-05-31 sporring:

#On imageserver1 and 2 things seems to be simpler:
screen
emerge --sync
eselect profile list
eselect profile 1 % default/linux/amd64/2008.0
# Checked /etc/portage/package.keywords for old stuff now removable
# Added svg and dri to /etc/make.conf USE flag - not sure it is needed, since imagediskserver1 doesn't run X
emerge portage
dispatch-conf
emerge -uDav --newuse util-linux
# Manually fetched
#emacs-22.3-patches-1.tar.bz2                     100% 2622     2.6KB/s   00:00    
#genpatches-2.6.29-7.base.tar.bz2                 100%   98KB  98.4KB/s   00:00    
#genpatches-2.6.29-7.extras.tar.bz2               100%   24KB  24.1KB/s   00:00    
#ntp-4.2.4p7-manpages.tar.bz2                     100%   49KB  48.6KB/s   00:00    
#pango-1.24.2.tar.bz2                             100% 1492KB   1.5MB/s   00:00    
#python-gentoo-patches-2.6.2-r1.tar.bz2           100% 9706     9.5KB/s   00:00    
#ntp-4.2.4p7.tar.gz                               100% 3303KB   3.2MB/s   00:00    
# and copied them to /usr/portage/distfiles/
emerge -uDav --newuse system 
FEATURES=-unmerge-orphans emerge cracklib
emerge -uDav --newuse system 
dispatch-conf
enotice 
emerge -C man-pages
# Added "=x11-libs/libdrm-2.4.9 ~amd64" to /etc/portage/package.keywords and removed everything except gclu and enotice
emerge -uDav --newuse world
revdep-rebuild
updatedb
/usr/sbin/python-updater
dispatch-conf
enotice 

#On imageserver 3 I had also to do appropriately:
emerge -f e2fsprogs e2fsprogs-libs && emerge -C com_err ss && emerge e2fsprogs e2fsprogs-libs

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