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2011-09-23 sommer:

New setup for portage. emerge now uses tunnels on Testing on imageserver2. Before using emerge run on ask

 ssh -N -R imageserver2
 ssh -N -R imageserver2

assuming imageserver2 points to imageserver2 (otherwise use ip). /etc/make.conf on imageserver2 is setup up to use these tunnel.


 emerge --sync
 emerge portage (and updated three conf files)
 emerge glibc (trying to solve freesurfer popen problem)


sommer@imageserver2 ~ $ gcc-config -l

[1] x86_64-pc-linux-gnu-4.1.2 *
[2] x86_64-pc-linux-gnu-4.3.4

sommer@imageserver2 ~ $ gcc-config 2

2009-11-10 kimstp:

Emerged GNU Scientific Library (gsl):

 emerge gsl

2009-11-10 kimstp:

Reinstalled Opencv by hand in /opt/opencv

2009-11-06 :

  • updated gentoo to latest version including...
    • shifting profile
    • added '-apache' to USE flags in /etc/make.conf to prevent installation of apache
    • added 'dev-libs/apr-util -mysql' to /etc/portage/package.use to prevent installation of mysql

(the last point was not done on imageserver1 before upgrading. Mysql is therefore installed on this server)

2009-10-26 runef:

  • Installed sysstat for monitoring resources
emerge sysstat  (required no extra dependencies)
rc-update -a sysstat defaults

Sysstat tutorial:

2009-08-25 sporring:

glcu failed, updated by hand, no problems except many files missing from diku mirror. Python upgraded to 2.6, keep an eye out for possible problems.

2009-06-19 kimstp:

Installed boost on all imageserver machines by doing:

 emerge boost

Apparently no problems.

2009-06-19 kimstp:

Installed blas-atlas, lapack-atlas, GLEW, and DEVIL on all machines by doing:

 emerge blas-atlas lapack-atlas glew devil

Apparently no problems.

2009-06-17 kimstp:

Installed OpenCV version 1.1pre1 by hand on all machines in


Apparently no problems.

2009-05-31 sporring:

#On imageserver1 and 2 things seems to be simpler:
emerge --sync
eselect profile list
eselect profile 1 % default/linux/amd64/2008.0
# Checked /etc/portage/package.keywords for old stuff now removable
# Added svg and dri to /etc/make.conf USE flag - not sure it is needed, since imagediskserver1 doesn't run X
emerge portage
emerge -uDav --newuse util-linux
# Manually fetched
#emacs-22.3-patches-1.tar.bz2                     100% 2622     2.6KB/s   00:00    
#genpatches-2.6.29-7.base.tar.bz2                 100%   98KB  98.4KB/s   00:00    
#genpatches-2.6.29-7.extras.tar.bz2               100%   24KB  24.1KB/s   00:00    
#ntp-4.2.4p7-manpages.tar.bz2                     100%   49KB  48.6KB/s   00:00    
#pango-1.24.2.tar.bz2                             100% 1492KB   1.5MB/s   00:00    
#python-gentoo-patches-2.6.2-r1.tar.bz2           100% 9706     9.5KB/s   00:00    
#ntp-4.2.4p7.tar.gz                               100% 3303KB   3.2MB/s   00:00    
# and copied them to /usr/portage/distfiles/
emerge -uDav --newuse system 
FEATURES=-unmerge-orphans emerge cracklib
emerge -uDav --newuse system 
emerge -C man-pages
# Added "=x11-libs/libdrm-2.4.9 ~amd64" to /etc/portage/package.keywords and removed everything except gclu and enotice
emerge -uDav --newuse world

#On imageserver 3 I had also to do appropriately:
emerge -f e2fsprogs e2fsprogs-libs && emerge -C com_err ss && emerge e2fsprogs e2fsprogs-libs

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